1. ID mapping with uniprot_map | Default settings | Return fields | From/to database | Format | Path | Other arguments | Isoform | Method and page_size | Compressed | Verbosity | Dry_run | 2. Querying UniProt with uniprot_search | 3. Retrieving an entry with uniprot_single
Package: uniprotREST 1.0.0
uniprotREST: R wrapper for the UniProt website REST API
Simple functions to access the UniProt website REST API. Wraps httr2 functions to easily map IDs and query all available databases.
Authors:
uniprotREST_1.0.0.tar.gz
uniprotREST_1.0.0.zip(r-4.7)uniprotREST_1.0.0.zip(r-4.6)uniprotREST_1.0.0.zip(r-4.5)
uniprotREST_1.0.0.tgz(r-4.6-any)uniprotREST_1.0.0.tgz(r-4.5-any)
uniprotREST_1.0.0.tar.gz(r-4.7-any)uniprotREST_1.0.0.tar.gz(r-4.6-any)
uniprotREST_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
uniprotREST/json (API)
| # Install 'uniprotREST' in R: |
| install.packages('uniprotREST', repos = c('https://csdaw.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csdaw/uniprotrest/issues
Pkgdown/docs site:https://csdaw.github.io
Datasets:
- formats - (Dataset) UniProt download formats
- from_to_dbs - (Dataset) From/to databases for ID mapping
- from_to_rules - (Dataset) From/to rules for ID mapping
- return_fields - (Dataset) UniProt return fields
Last updated from:3da0fee571. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 139 | ||
| source / vignettes | OK | 236 | ||
| linux-release-x86_64 | NOTE | 131 | ||
| macos-release-arm64 | NOTE | 84 | ||
| macos-oldrel-arm64 | NOTE | 119 | ||
| windows-devel | NOTE | 91 | ||
| windows-release | NOTE | 72 | ||
| windows-oldrel | NOTE | 95 | ||
| wasm-release | OK | 141 |
Exports:fetch_pagedfetch_streamresp_body_fastaresp_body_tsvuniprot_mapuniprot_requestuniprot_searchuniprot_single
Dependencies:askpassbackportscheckmateclicurlgluehttr2lifecyclemagrittropensslR6rappdirsrlangsysvctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fetch results via pagination | fetch_paged |
| Fetch results via stream | fetch_stream |
| (Dataset) UniProt download formats | formats |
| (Dataset) From/to databases for ID mapping | from_to_dbs |
| (Dataset) From/to rules for ID mapping | from_to_rules |
| Extract FASTA data from response body | resp_body_fasta |
| Extract tab-delimited data from response body | resp_body_tsv |
| (Dataset) UniProt return fields | return_fields |
| Map from/to UniProt IDs | uniprot_map |
| Create a UniProt HTTP request | uniprot_request |
| Search UniProt | uniprot_search |
| Download a single UniProt entry | uniprot_single |
