Package: uniprotREST 1.0.0
uniprotREST: R wrapper for the UniProt website REST API
Simple functions to access the UniProt website REST API. Wraps httr2 functions to easily map IDs and query all available databases.
Authors:
uniprotREST_1.0.0.tar.gz
uniprotREST_1.0.0.zip(r-4.5)uniprotREST_1.0.0.zip(r-4.4)uniprotREST_1.0.0.zip(r-4.3)
uniprotREST_1.0.0.tgz(r-4.4-any)uniprotREST_1.0.0.tgz(r-4.3-any)
uniprotREST_1.0.0.tar.gz(r-4.5-noble)uniprotREST_1.0.0.tar.gz(r-4.4-noble)
uniprotREST_1.0.0.tgz(r-4.4-emscripten)uniprotREST_1.0.0.tgz(r-4.3-emscripten)
uniprotREST.pdf |uniprotREST.html✨
uniprotREST/json (API)
NEWS
# Install 'uniprotREST' in R: |
install.packages('uniprotREST', repos = c('https://csdaw.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/csdaw/uniprotrest/issues
- formats - (Dataset) UniProt download formats
- from_to_dbs - (Dataset) From/to databases for ID mapping
- from_to_rules - (Dataset) From/to rules for ID mapping
- return_fields - (Dataset) UniProt return fields
Last updated 1 years agofrom:3da0fee571. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-win | NOTE | Nov 21 2024 |
R-4.5-linux | NOTE | Nov 21 2024 |
R-4.4-win | NOTE | Nov 21 2024 |
R-4.4-mac | NOTE | Nov 21 2024 |
R-4.3-win | OK | Nov 21 2024 |
R-4.3-mac | OK | Nov 21 2024 |
Exports:fetch_pagedfetch_streamresp_body_fastaresp_body_tsvuniprot_mapuniprot_requestuniprot_searchuniprot_single
Dependencies:askpassbackportscheckmateclicurlgluehttr2lifecyclemagrittropensslR6rappdirsrlangsysvctrswithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Fetch results via pagination | fetch_paged |
Fetch results via stream | fetch_stream |
(Dataset) UniProt download formats | formats |
(Dataset) From/to databases for ID mapping | from_to_dbs |
(Dataset) From/to rules for ID mapping | from_to_rules |
Extract FASTA data from response body | resp_body_fasta |
Extract tab-delimited data from response body | resp_body_tsv |
(Dataset) UniProt return fields | return_fields |
Map from/to UniProt IDs | uniprot_map |
Create a UniProt HTTP request | uniprot_request |
Search UniProt | uniprot_search |
Download a single UniProt entry | uniprot_single |